Add your Web Site - Taxonomy - Software Add Search to your Site Search for: Internet Entire Directory Directory - Software Results per page: 10 20 50 Output format: Long Short URL Match: All Any Boolean Pages from: All Countries Afghanistan American Samoa Albania Algeria Andorra Angola Anguilla Antigua and Barbuda Antarctica Argentina Armenia Aruba Australia Austria Azerbaijan Bahamas Bahrain Bangladesh Barbados Belarus Belgium Belize Benin Bermuda Bhutan Bolivia Bosnia and Herzegovina Botswana Bouvet Island Brazil British Indian Ocean Territory Brunei Darussalam Bulgaria Burkina Faso Burundi Cambodia Cameroon Canada Cape Verde Cayman Islands Central African Republic Chad Chile China Christmas Island Cocos (Keeling) Islands Colombia Comoros Congo Cook Islands Costa Rica Cote D'Ivoire (Ivory Coast) Croatia (Hrvatska) Cuba Cyprus Czech Republic Czechoslovakia (former) Denmark Djibouti Dominica Dominican Republic East Timor Ecuador Egypt El Salvador Eritrea Estonia Ethiopia Equatorial Guinea Falkland Islands (Malvinas) Faroe Islands Fiji Finland France France, Metropolitan French Guiana French Polynesia French Southern Territories Gabon Gambia Germany Georgia Ghana Gibraltar Great Britain (UK) Greece Greenland Grenada Guadeloupe Guam Guatemala Guinea Guinea-Bissau Guyana Haiti Heard and McDonald Islands Honduras Hungary Hong Kong Iceland India Indonesia Iran Iraq Ireland Israel Italy Jamaica Japan Jordan Kazakhstan Kenya Kiribati Korea (North) Korea (South) Kuwait Kyrgyzstan Laos Latvia Lebanon Lesotho Liberia Libya Liechtenstein Lithuania Luxembourg Macau Macedonia Madagascar Malawi Malaysia Maldives Mali Malta Marshall Islands Martinique Mauritania Mauritius Mayotte Mexico Micronesia Moldova Monaco Mongolia Montserrat Morocco Mozambique Myanmar Namibia Nauru Nepal Netherlands Netherlands Antilles Neutral Zone New Caledonia New Zealand (Aotearoa) Northern Mariana Islands Nicaragua Niue Niger Nigeria Norfolk Island Norway Oman Pakistan Palau Panama Papua New Guinea Paraguay Peru Philippines Pitcairn Poland Portugal Puerto Rico Qatar Reunion Romania Russian Federation Rwanda Saint Kitts and Nevis Saint Lucia Saint Vincent and the Grenadines Samoa San Marino Sao Tome and Principe Saudi Arabia Senegal Seychelles Sierra Leone Singapore Slovak Republic Slovenia Solomon Islands Somalia South Africa S. Georgia and S. Sandwich Isls. Spain Sri Lanka St. Pierre and Miquelon St. Helena Sudan Suriname Svalbard and Jan Mayen Islands Swaziland Sweden Switzerland Syria Taiwan Tajikistan Tanzania Thailand Togo Tokelau Tonga Trinidad and Tobago Tunisia Turkey Turkmenistan Turks and Caicos Islands Tuvalu Uganda Ukraine United Arab Emirates United States Uruguay US Minor Outlying Islands Uzbekistan Vanuatu Vatican City State (Holy See) Venezuela Virgin Islands (British) Virgin Islands (U.S.) Viet Nam Wallis and Futuna Islands Western Sahara Yemen Yugoslavia Zaire Zambia Zimbabwe    Alignment Software (1)  Directories (8)  Comparative Methods (2)  Taxonomic Databases (7)      Show pages from United States   Show all pages  DIRECTORY/Science/Tech/Biology/Taxonomy/Software (36) 3I - Internet-accessible Interactive Identification - http://ctap.inhs.uiuc.edu/dmitriev/ - Program to create internet-accessible interactive taxonomic keys.   Clann: Software for Supertree Methods - http://bioinf.may.ie/software/clann/ - Clann implements a large number of supertree methods for reconstructing phylogenies from sets of input phylogenetic trees.   Component - http://taxonomy.zoology.gla.ac.uk/rod/cpw.html - For analysis of phylogenies. Includes a wide range of randomization methods, consensus methods, tree comparison measures, and calculates reconciled trees. Now aging, and available only for Windows machines, but still has some unique features. Much of the functionality is now replaced by RadCon, GeneTree, TreeMap and the latest release of PAUP.   GeneTree - http://taxonomy.zoology.gla.ac.uk/rod/genetree/genetree.html - Uses reconciled trees to compare gene trees and species trees, explaining incongruence between the phylogenies by postulating horizontal transfer, gene duplication and loss events. Reprints of papers describing the methods are available from the GeneTree web page. Available for Macintosh and Windows.   MacClade - http://phylogeny.arizona.edu/macclade/macclade.html - A powerful Macintosh package for phylogenetic analysis. Not intended as a stand-alone tool to infer phylogeny, but excels in studying character evolution. Also provides tools for entering and editing data and phylogenies and producing attractive tree diagrams and charts.   Mesquite - http://mesquiteproject.org/mesquite/mesquite.html - Experimental, modular software for evolutionary biology, designed to help biologists analyze comparative data about organisms.   MrBayes - http://mrbayes.csit.fsu.edu/ - Open source software for estimation of phylogenies using Bayesian inference.   NONA - http://www.cladistics.com/aboutNona.htm - Freeware software for phylogenetic analyses using parsimony.   NONA - A Quick Guide to the Commands - http://www.gwu.edu/~clade/faculty/lipscomb/Nonadoc.html - A brief overview of using NONA for phylogenetic analysis.   PAML - http://abacus.gene.ucl.ac.uk/software/paml.html - Phylogenetic analyses of DNA or protein sequences using maximum likelihood.   PAUP* - http://paup.csit.fsu.edu/ - PAUP is the most widely used package for phylogenetic inference, and now implements maximum likelihood and distance methods as well as various forms of parsimony. Powerful and very easy to use, particularly the Mac version.   PHYLIP - http://evolution.genetics.washington.edu/phylip.html - Joe Felsenstein's suite of programs implementing perhaps the widest range of phylogenetic inference package. The most widely distributed phylogeny software. Includes distance, likelihood and parsimony methods for a wide range of different types of data, and runs on most platforms.   Phylo-Win - http://pbil.univ-lyon1.fr/software/phylowin.html - Graphical color interface for molecular phylogenetic inference. It performs neighbor-joining, parsimony, and maximum likelihood methods and bootstrap with any of them.   Phylodendron - http://iubio.bio.indiana.edu/soft/molbio/java/apps/trees/ - Java application for drawing phylogenetic trees. Allows you to save in various formats, print, edit, modify, and adorn the tree, and should work on any java runtime platform.   SuperTree - http://www.tcd.ie/Botany/NS/SuperTree.html - Implements various supertree building methods. Available in Linux/Unix and PC versions.   Tree Puzzle - http://www.tree-puzzle.de/ - Computer program to reconstruct phylogenetic trees from molecular sequence data by maximum likelihood.   TreeMap - http://taxonomy.zoology.gla.ac.uk/rod/treemap.html - Experimental program for comparing host and parasite trees.   TreeView - http://taxonomy.zoology.gla.ac.uk/rod/treeview.html - Simple program for displaying phylogenies.    E-Mail: webmaster@teradex.com Copyright © 2007 Aaex Corp. all rights reserved.

Help build the largest human-edited directory on the web. Submit a Site - Open Directory Project - Become an Editor This site is presented in modified Open Directory form